Erratum in discovered bibtex,
Mike Marchywka
marchywka at hotmail.com
Fri May 12 14:30:00 CEST 2023
I got a pubmed alert on an erratum for this article,
https://pubmed.ncbi.nlm.nih.gov/37038034/
and entering this url into zotero webform gives,
@article{fujihara_inhibition_2023,
title = {Inhibition of {Aβ} aggregation by naphtho-γ-pyrone derivatives from a marine-derived fungus, {Aspergillus} sp. {MPUC239}},
issn = {1861-0293},
doi = {10.1007/s11418-023-01696-9},
abstract = {Alzheimer's disease (AD) is an important human disease that mainly causes cognitive impairments. Growing evidence has shown that amyloid-β (Aβ) peptide plays a key role in AD pathogenesis in what is known as the Aβ cascade hypothesis. This hypothesis suggests the importance of suppressing Aβ aggregation and Aβ production. The latter process is governed by β-site APP Cleaving Enzyme1 (BACE1) and γ-secretase. We, therefore, focused on Aβ aggregation inhibitory activity, initially assessing numerous extracts derived from our marine-derived fungus collections. One EtOAc extract derived from an Aspergillus sp. exhibited Aβ aggregation inhibitory activity. Eleven known compounds (1-11) were isolated from CHCl3 and EtOAc extracts derived from the fungus, and the structures were identified based on MS, NMR, and ECD spectra. Compounds 2, 6, and 10 inhibited Aβ aggregation with IC50 values of 2.8, 3.9, and 8.1 μM, respectively. The protective effect on SH-SY5Y cells against Aβ toxicity was also evaluated, and compounds 6 and 10 significantly alleviated Aβ toxicity. BACE1 inhibitory activity was also examined, and compounds 4, 5, 7, 10, and 11 inhibited BACE1 activity with IC50 values of 14.9, 70.0, 36.5, 28.0, and 72.8 μM, respectively. These data suggest that compound 10 could be useful in AD treatment.},
language = {eng},
journal = {Journal of Natural Medicines},
author = {Fujihara, Koji and Hashimoto, Takumi and Sasaki, Hiroaki and Koyama, Kiyotaka and Kinoshita, Kaoru},
month = apr,
year = {2023},
pmid = {37038034},
pmcid = {PMC10088752},
keywords = {Alzheimer’s disease, Amyloid beta, Aspergillus, BACE1, Fungus, Naphto-γ-pyrone, Polyketide},
pages = {1--7},
}
and AFAICT, please correct me if a I missed it, no indication of an Erratrum.
Interestinly, croessref contains an "assertion" entry which mentions the
update although no indication in the medline entry this time :)
TooBib will try to include all fields it finds although this is not
always done in an elegant way, the information is there as an alert
to the user. I'm sure that Zotero is much more sterile but that
may hide things of relevance. Again however their full install may
be more informative than their webform.
I guess a careful author may want to run "toobib -all" to
get a good list of bibtex entries for citations as a final
manuscript review :)
The correction indication in the assertion entry only appears
in entries from crossref AFAICT,
cat xxxx | grep "mjmhandler\|assertion" | cut -c 1-72
% mjmhandler: toobib guesspubmed
% mjmhandler: toobib handledoi(crossref)
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handledoi(crossref)
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handledoi(crossref)
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handledoixml ( quality i=0 szr=12 goods=1 )(crossre
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handlepdfstrings(crossref)
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handleadhochtml<-citation
% mjmhandler: toobib handleadhochtml<-og
% mjmhandler: toobib handleadhochtml<-all
% mjmhandler: toobib handlegsmeta(scraper)
% mjmhandler: toobib handlegsmeta(html)
% mjmhandler: toobib handleheadless<-handledoi
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handleheadless<-handlepdf
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
% mjmhandler: toobib handleheadless<-handlepdfstrings
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Arti
TooBib output,
% mjmhandler: toobib guesspubmed
% date 2023-05-12:08:09:46 Fri May 12 08:09:46 EDT 2023
% srcurl: https://pubmed.ncbi.nlm.nih.gov/37038034/
% citeurl: eutilsnew -out "/tmp/filesS2yk9.outguesses" -v -db pubmed -report medline 37038034
%CI = {(c) 2023. The Author(s) under exclusive licence to The Japanese Society of Pharmacognosy.},
%CRDT = {2023/04/10 23:25},
%DP = {2023 Apr 10},
%EDAT = {2023/04/11 06:00},
%EIN = {J Nat Med. 2023 May 11;:. PMID: 37166560},
%GR = {JP 19K07143/JSPS KAKENHI Grants-in-Aid for Scientific Research (C)/},
%JID = {101518405},
%LA = {eng},
%LR = {20230511},
%MHDA = {2023/04/11 06:00},
%OT = {Polyketide},
%OTO = {NOTNLM},
%OWN = {NLM},
%PL = {Japan},
%PST = {aheadofprint},
%PT = {Journal Article},
%SB = {IM},
%SO = {J Nat Med. 2023 Apr 10:1-7. doi: 10.1007/s11418-023-01696-9.},
%STAT = {Publisher},
%TA = {J Nat Med}
@article{PMC10088752,
X_TooBib = {date: 20230410},
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2023-05-12 dn=urldate},
X_TooBib = {publisher: ReWriteParse be.get(s)= be.get(dest)=},
X_TooBib = {author: Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
abstract = {Alzheimer's disease (AD) is an important human disease that mainly causes cognitive impairments. Growing evidence has shown that amyloid-beta (Abeta) peptide plays a key role in AD pathogenesis in what is known as the Abeta cascade hypothesis. This hypothesis suggests the importance of suppressing Abeta aggregation and Abeta production. The latter process is governed by beta-site APP Cleaving Enzyme1 (BACE1) and gamma-secretase. We, therefore, focused on Abeta aggregation inhibitory activity, initially assessing numerous extracts derived from our marine-derived fungus collections. One EtOAc extract derived from an Aspergillus sp. exhibited Abeta aggregation inhibitory activity. Eleven known compounds (1-11) were isolated from CHCl(3) and EtOAc extracts derived from the fungus, and the structures were identified based on MS, NMR, and ECD spectra. Compounds 2, 6, and 10 inhibited Abeta aggregation with IC(50) values of 2.8, 3.9, and 8.1 muM, respectively. The protective effect on SH-SY5Y cells against Abeta toxicity was also evaluated, and compounds 6 and 10 significantly alleviated Abeta toxicity. BACE1 inhibitory activity was also examined, and compounds 4, 5, 7, 10, and 11 inhibited BACE1 activity with IC(50) values of 14.9, 70.0, 36.5, 28.0, and 72.8 muM, respectively. These data suggest that compound 10 could be useful in AD treatment.},
address = {Department of Pharmacognosy and Phytochemistry, Meiji Pharmaceutical University, Noshio 2-522-1, Kiyose-Shi, Tokyo, 204-8588, Japan.Department of Pharmacognosy and Phytochemistry, Meiji Pharmaceutical University, Noshio 2-522-1, Kiyose-Shi, Tokyo, 204-8588, Japan.Department of Pharmacognosy and Phytochemistry, Meiji Pharmaceutical University, Noshio 2-522-1, Kiyose-Shi, Tokyo, 204-8588, Japan.Department of Pharmacognosy and Phytochemistry, Meiji Pharmaceutical University, Noshio 2-522-1, Kiyose-Shi, Tokyo, 204-8588, Japan.Department of Pharmacognosy and Phytochemistry, Meiji Pharmaceutical University, Noshio 2-522-1, Kiyose-Shi, Tokyo, 204-8588, Japan. kaoru at my-pharm.ac.jp.},
auid = {ORCID: 0000-0002-8508-1625},
author = {Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
author_orig = {Fujihara, Koji and Hashimoto, Takumi and Sasaki, Hiroaki and Koyama, Kiyotaka and Kinoshita, Kaoru},
date = {20230410},
date_orig = {20230410 },
day = {10},
doi = {10.1007/s11418-023-01696-9},
issue = {1861-0293 (Electronic)1340-3443 (Print)1340-3443 (Linking)},
journal = {Journal of natural medicines},
month = {04},
pages = {1-7},
phst = {2023/01/06 00:00 [received] , 2023/03/17 00:00 [accepted] , 2023/04/11 06:00 [pubmed] , 2023/04/11 06:00 [medline] , 2023/04/10 23:25 [entrez]},
pubtype = {Journal Article},
title = {Inhibition of Abeta aggregation by naphtho-gamma-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239.},
urldate = {2023-05-12},
year = {2023},
final_assembly ={ TooBib handler guesspubmed},
url={https://pubmed.ncbi.nlm.nih.gov/37038034/},
srcurl={https://pubmed.ncbi.nlm.nih.gov/37038034/},
xsrcurl={https://pubmed.ncbi.nlm.nih.gov/37038034/},
citeurl={eutilsnew},
toobib-date={2023-05-12:08:09:46 Fri May 12 08:09:46 EDT 2023}
}
% mjmhandler: toobib handledoi(crossref)
% date 2023-05-12:08:09:54 Fri May 12 08:09:54 EDT 2023
% srcurl: https://pubmed.ncbi.nlm.nih.gov/37038034/
% citeurl: http://api.crossref.org/works/10.1007/s11418-023-01696-9
@article{Fujihara_Hashimoto_Sasaki_Inhibition_Aupbeta_aggregation_2023,
X_TooBib = {date: 04/10/2023},
X_TooBib = {year: 2023, infield_fix_dates },
X_TooBib = {month: 04, infield_fix_dates },
X_TooBib = {day: 10, infield_fix_dates },
X_TooBib = {urldate: FixBeKvp s= cmd=date "+%Y-%m-%d" d=2023-05-12 dn=urldate},
X_TooBib = {author: Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
abbrvjrnl = {J Nat Med},
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alternative-id = {1696},
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Article History, 17 March 2023, 2, accepted, Accepted, ArticleHistory, Article History, 10 April 2023, 3, first_online, First Online, ArticleHistory, Article History, 11 May 2023, 4, change_date, Change Date, ArticleHistory, Article History, Correction, 5, change_type, Change Type, ArticleHistory, Article History, A Correction to this paper has been published:, 6, change_details, Change Details, ArticleHistory, Article History, https://doi.org/10.1007/s11418-023-01708-8, https://doi.org/10.1007/s11418-023-01708-8, 7, change_details, Change Details, ArticleHistory, Article History, This content has been made available to all., free, Free to read},
author = {Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
author_orig = {Koji Fujihara and Takumi Hashimoto and Hiroaki Sasaki and Kiyotaka Koyama and Kaoru Kinoshita},
bib-source = {Crossref},
content-domain = {link.springer.com, false},
date = {04/10/2023},
date-created = {2023-04-10T17:02:45Z},
date-deposited = {2023-05-112023-05-11T12:10:46Z},
date-indexed = {2023-05-12T04:31:40Z},
date-issued = {2023-04-10},
date-license = {2023-04-102023-04-10T00:00:00Z-2023-04-102023-04-10T00:00:00Z},
date-published-online = {2023-04-10},
date_orig = { 2023-04-10 2023-04-10 },
day = {10},
deposited = {1683807046000},
doi = {10.1007/s11418-023-01696-9},
funder = {JSPS KAKENHI Grants-in-Aid for Scientific Research, JP 17K08351, JP 19K07143},
is-referenced-by-count = {0},
issn = {1861-0293},
issn-type = {1340-3443, print, 1861-0293, electronic},
journal = {Journal of Natural Medicines},
language = {en},
license = {1681084800000, tdm, 0, https://www.springernature.com/gp/researchers/text-and-data-mining, 1681084800000, vor, 0, https://www.springernature.com/gp/researchers/text-and-data-mining},
link = {https://link.springer.com/content/pdf/10.1007/s11418-023-01696-9.pdf, application/pdf, vor, text-mining, https://link.springer.com/article/10.1007/s11418-023-01696-9/fulltext.html, text/html, vor, text-mining, https://link.springer.com/content/pdf/10.1007/s11418-023-01696-9.pdf, application/pdf, vor, similarity-checking},
member = {297},
month = {04},
prefix = {10.1007},
publication-date = {2023-04-10},
publisher = {Springer Science and Business Media LLC},
reference = {deleted},
reference-count = {18},
references-count = {18},
resource = {https://link.springer.com/10.1007/s11418-023-01696-9},
score = {1},
subject = {Molecular Medicine},
title = {Inhibition of Aupbeta aggregation by naphtho-upgamma-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239},
title_as_rcvd = {Inhibition of Aβ aggregation by naphtho-γ-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239},
type = {journal-article},
update-policy = {http://dx.doi.org/10.1007/springer_crossmark_policy},
url = {http://dx.doi.org/10.1007/s11418-023-01696-9},
urldate = {2023-05-12},
year = {2023},
final_assembly ={ TooBib handler handledoi(crossref)},
srcurl={https://pubmed.ncbi.nlm.nih.gov/37038034/},
xsrcurl={https://pubmed.ncbi.nlm.nih.gov/37038034/},
citeurl={http://api.crossref.org/works/10.1007/s11418-023-01696-9},
toobib-date={2023-05-12:08:09:54 Fri May 12 08:09:54 EDT 2023}
}
% mjmhandler: toobib handledoi(crossref)
% date 2023-05-12:08:09:55 Fri May 12 08:09:55 EDT 2023
% srcurl: https://pubmed.ncbi.nlm.nih.gov/37038034/
% citeurl: http://api.crossref.org/works/10.1007/s11418-023-01696-9
@article{Fujihara_Hashimoto_Sasaki_Inhibition_Aupbeta_aggregation_2023,
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X_TooBib = {year: 2023, infield_fix_dates },
X_TooBib = {month: 04, infield_fix_dates },
X_TooBib = {day: 10, infield_fix_dates },
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abbrvjrnl = {J Nat Med},
affiliation = {},
alternative-id = {1696},
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Article History, 17 March 2023, 2, accepted, Accepted, ArticleHistory, Article History, 10 April 2023, 3, first_online, First Online, ArticleHistory, Article History, 11 May 2023, 4, change_date, Change Date, ArticleHistory, Article History, Correction, 5, change_type, Change Type, ArticleHistory, Article History, A Correction to this paper has been published:, 6, change_details, Change Details, ArticleHistory, Article History, https://doi.org/10.1007/s11418-023-01708-8, https://doi.org/10.1007/s11418-023-01708-8, 7, change_details, Change Details, ArticleHistory, Article History, This content has been made available to all., free, Free to read},
author = {Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
author_orig = {Koji Fujihara and Takumi Hashimoto and Hiroaki Sasaki and Kiyotaka Koyama and Kaoru Kinoshita},
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content-domain = {link.springer.com, false},
date = {04/10/2023},
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date-deposited = {2023-05-112023-05-11T12:10:46Z},
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date-issued = {2023-04-10},
date-license = {2023-04-102023-04-10T00:00:00Z-2023-04-102023-04-10T00:00:00Z},
date-published-online = {2023-04-10},
date_orig = { 2023-04-10 2023-04-10 },
day = {10},
deposited = {1683807046000},
doi = {10.1007/s11418-023-01696-9},
funder = {JSPS KAKENHI Grants-in-Aid for Scientific Research, JP 17K08351, JP 19K07143},
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issn = {1861-0293},
issn-type = {1340-3443, print, 1861-0293, electronic},
journal = {Journal of Natural Medicines},
language = {en},
license = {1681084800000, tdm, 0, https://www.springernature.com/gp/researchers/text-and-data-mining, 1681084800000, vor, 0, https://www.springernature.com/gp/researchers/text-and-data-mining},
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reference-count = {18},
references-count = {18},
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subject = {Molecular Medicine},
title = {Inhibition of Aupbeta aggregation by naphtho-upgamma-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239},
title_as_rcvd = {Inhibition of A� aggregation by naphtho-�-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239},
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% mjmhandler: toobib handledoi(crossref)
% date 2023-05-12:08:09:55 Fri May 12 08:09:55 EDT 2023
% srcurl: https://pubmed.ncbi.nlm.nih.gov/37038034/
% citeurl: http://api.crossref.org/works/10.1007/s11418-023-01696-9
@article{Fujihara_Hashimoto_Sasaki_Inhibition_Aupbeta_aggregation_2023,
X_TooBib = {date: 04/10/2023},
X_TooBib = {year: 2023, infield_fix_dates },
X_TooBib = {month: 04, infield_fix_dates },
X_TooBib = {day: 10, infield_fix_dates },
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X_TooBib = {author: Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
abbrvjrnl = {J Nat Med},
affiliation = {},
alternative-id = {1696},
assertion = {6 January 2023, 1, received, Received, ArticleHistory, Article History, 17 March 2023, 2, accepted, Accepted, ArticleHistory, Article History, 10 April 2023, 3, first_online, First Online, ArticleHistory, Article History, 11 May 2023, 4, change_date, Change Date, ArticleHistory, Article History, Correction, 5, change_type, Change Type, ArticleHistory, Article History, A Correction to this paper has been published:, 6, change_details, Change Details, ArticleHistory, Article History, https://doi.org/10.1007/s11418-023-01708-8, https://doi.org/10.1007/s11418-023-01708-8, 7, change_details, Change Details, ArticleHistory, Article History, This content has been made available to all., free, Free to read},
author = {Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
author_orig = {Koji Fujihara and Takumi Hashimoto and Hiroaki Sasaki and Kiyotaka Koyama and Kaoru Kinoshita},
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date_orig = { 2023-04-10 2023-04-10 },
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journal = {Journal of Natural Medicines},
language = {en},
license = {1681084800000, tdm, 0, https://www.springernature.com/gp/researchers/text-and-data-mining, 1681084800000, vor, 0, https://www.springernature.com/gp/researchers/text-and-data-mining},
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reference-count = {18},
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resource = {https://link.springer.com/10.1007/s11418-023-01696-9},
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subject = {Molecular Medicine},
title = {Inhibition of Aupbeta aggregation by naphtho-upgamma-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239},
title_as_rcvd = {Inhibition of A� aggregation by naphtho-�-pyrone derivatives from a marine-derived fungus, Aspergillus sp. MPUC239},
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X_TooBib = {year: 2023, infield_fix_dates },
X_TooBib = {month: 04, infield_fix_dates },
X_TooBib = {day: 10, infield_fix_dates },
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X_TooBib = {author: Fujihara , Koji and Hashimoto , Takumi and Sasaki , Hiroaki and Koyama , Kiyotaka and Kinoshita , Kaoru},
abbrvjrnl = {J Nat Med},
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--
mike marchywka
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Jasper GA 30143
USA, Earth marchywka at hotmail.com
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